HL_5JUS_085
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5JUS|1|B|A|2256, 5JUS|1|B|C|2257
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_085 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.4975
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JUS|1|B|G|2253
5JUS|1|B|U|2254
5JUS|1|B|A|2255
5JUS|1|B|A|2256
5JUS|1|B|C|2257
5JUS|1|B|U|2258
5JUS|1|B|A|2259
5JUS|1|B|U|2260
5JUS|1|B|G|2261
5JUS|1|B|A|2262
5JUS|1|B|C|2263
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- eS30 (yeast S30)
- Chain DC
- yeast eEF2
Coloring options: