HL_5JUT_008

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5JUT|1|A|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2833

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5JUT|1|A|G|330
5JUT|1|A|A|331
5JUT|1|A|U|332
5JUT|1|A|A|333
5JUT|1|A|G|334
5JUT|1|A|U|335
5JUT|1|A|G|336
5JUT|1|A|G|337
5JUT|1|A|C|338

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain IB

uS17 (yeast S11)