HL_5JUT_057
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5JUT|1|B|U|879, 5JUT|1|B|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_057 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.2223
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUT|1|B|A|876
5JUT|1|B|C|877
5JUT|1|B|G|878
5JUT|1|B|U|879
5JUT|1|B|G|880
5JUT|1|B|C|881
5JUT|1|B|A|882
5JUT|1|B|A|883
5JUT|1|B|A|884
5JUT|1|B|U|885
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- uL3 (yeast L3)
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain U
- uL22 (yeast L17)
Coloring options: