HL_5JUT_058
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 5JUT|1|B|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_058 not in the Motif Atlas
- Homologous match to HL_8C3A_021
- Geometric discrepancy: 0.1669
- The information below is about HL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUT|1|B|G|910
5JUT|1|B|C|911
5JUT|1|B|G|912
5JUT|1|B|A|913
5JUT|1|B|A|914
5JUT|1|B|A|915
5JUT|1|B|G|916
5JUT|1|B|A|917
5JUT|1|B|C|918
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain OA
- eL37 (yeast L37)
- Chain S
- eL15 (yeast L15)
Coloring options: