HL_5K0Y_006

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5K0Y|1|A|U|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2114

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5K0Y|1|A|G|279
5K0Y|1|A|G|280
5K0Y|1|A|U|281
5K0Y|1|A|G|282
5K0Y|1|A|A|283
5K0Y|1|A|C|284
5K0Y|1|A|U|285
5K0Y|1|A|C|286

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

ribosomal protein uS17

Chain I

40S ribosomal protein S4

Chain q

40S ribosomal protein S6