HL_5K0Y_020
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_020 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3444
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|U|881
5K0Y|1|A|A|882
5K0Y|1|A|U|883
5K0Y|1|A|U|884
5K0Y|1|A|U|885
5K0Y|1|A|U|886
5K0Y|1|A|G|887
5K0Y|1|A|U|888
5K0Y|1|A|U|889
5K0Y|1|A|G|890
5K0Y|1|A|G|891
5K0Y|1|A|U|892
5K0Y|1|A|U|893
5K0Y|1|A|U|894
5K0Y|1|A|U|895
5K0Y|1|A|C|896
5K0Y|1|A|G|897
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain q
- 40S ribosomal protein S6
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