HL_5K0Y_027
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 5K0Y|1|A|A|1249
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_027 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2388
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|G|1241
5K0Y|1|A|A|1242
5K0Y|1|A|C|1243
5K0Y|1|A|U|1244
5K0Y|1|A|C|1245
5K0Y|1|A|A|1246
5K0Y|1|A|A|1247
5K0Y|1|A|C|1248
5K0Y|1|A|A|1249
5K0Y|1|A|C|1250
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain J
- ribosomal protein uS14
- Chain N
- Transfer RNA; tRNA
- Chain h
- ribosomal protein uS10
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