HL_5KCR_088
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5KCR|1|1a|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KCR_088 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.1105
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5KCR|1|1a|G|786
5KCR|1|1a|A|787
5KCR|1|1a|U|788
5KCR|1|1a|U|789
5KCR|1|1a|A|790
5KCR|1|1a|G|791
5KCR|1|1a|A|792
5KCR|1|1a|U|793
5KCR|1|1a|A|794
5KCR|1|1a|C|795
5KCR|1|1a|C|796
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
- Chain 1u
- 30S ribosomal protein S21
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
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