HL_5KPS_017
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5KPS|1|27|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPS_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1206
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5KPS|1|27|G|786
5KPS|1|27|A|787
5KPS|1|27|U|788
5KPS|1|27|U|789
5KPS|1|27|A|790
5KPS|1|27|G|791
5KPS|1|27|A|792
5KPS|1|27|U|793
5KPS|1|27|A|794
5KPS|1|27|C|795
5KPS|1|27|C|796
Current chains
- Chain 27
- 16S ribosomal RNA
Nearby chains
- Chain 16
- 30S ribosomal protein S11
- Chain 26
- 30S ribosomal protein S21
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 30
- mRNA
- Chain 31
- Transfer RNA; tRNA
- Chain 32
- Transfer RNA; tRNA
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