HL_5KPS_025

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5KPS|1|27|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_025 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.123

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5KPS|1|27|G|1089
5KPS|1|27|U|1090
5KPS|1|27|U|1091
5KPS|1|27|A|1092
5KPS|1|27|A|1093
5KPS|1|27|G|1094
5KPS|1|27|U|1095
5KPS|1|27|C|1096

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S7

Chain 26

30S ribosomal protein S21

Chain 7

30S ribosomal protein S2