HL_5KPS_037

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_037 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1876

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPS|1|28|U|158
5KPS|1|28|G|159
5KPS|1|28|A|160
5KPS|1|28|A|161
5KPS|1|28|U|162
5KPS|1|28|C|163
5KPS|1|28|C|164
5KPS|1|28|A|165
5KPS|1|28|U|166
5KPS|1|28|A|167
5KPS|1|28|G|168

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28