HL_5KPS_043

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5KPS|1|28|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_043 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1348

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPS|1|28|A|382
5KPS|1|28|C|383
5KPS|1|28|A|384
5KPS|1|28|C|385
5KPS|1|28|G|386
5KPS|1|28|U|387
5KPS|1|28|G|388
5KPS|1|28|G|389
5KPS|1|28|U|390
5KPS|1|28|A|391
5KPS|1|28|U|392

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA

Chain X

50S ribosomal protein L28