HL_5L3P_116

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5L3P|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_116 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1832

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5L3P|1|A|A|382
5L3P|1|A|C|383
5L3P|1|A|A|384
5L3P|1|A|C|385
5L3P|1|A|G|386
5L3P|1|A|U|387
5L3P|1|A|G|388
5L3P|1|A|G|389
5L3P|1|A|U|390
5L3P|1|A|A|391
5L3P|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28