HL_5LKS_043

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

5LKS|1|L5|C|2794, 5LKS|1|L5|G|2796, 5LKS|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_043 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.2037

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5LKS|1|L5|C|2792
5LKS|1|L5|G|2793
5LKS|1|L5|C|2794
5LKS|1|L5|A|2795
5LKS|1|L5|G|2796
5LKS|1|L5|C|2797
5LKS|1|L5|A|2798
5LKS|1|L5|G|2799

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39