HL_5LMV_015

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMV_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1148

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5LMV|1|A|C|689
5LMV|1|A|G|690
5LMV|1|A|G|691
5LMV|1|A|U|692
5LMV|1|A|G|693
5LMV|1|A|A|694
5LMV|1|A|A|695
5LMV|1|A|A|696
5LMV|1|A|U|697
5LMV|1|A|G|698

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain K

30S ribosomal protein S11

Chain X

Translation initiation factor IF-3

Chain Y

mRNA