3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
5LZB|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZB_016 not in the Motif Atlas
Homologous match to HL_7RQB_018
Geometric discrepancy: 0.2075
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

5LZB|1|A|U|566
5LZB|1|A|U|567
5LZB|1|A|U|568
5LZB|1|A|U|569
5LZB|1|A|G|570
5LZB|1|A|U|571
5LZB|1|A|A|572
5LZB|1|A|U|573
5LZB|1|A|A|574
5LZB|1|A|A|575

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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