HL_5LZE_011

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5LZE|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1103

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZE|1|A|A|382
5LZE|1|A|C|383
5LZE|1|A|A|384
5LZE|1|A|C|385
5LZE|1|A|G|386
5LZE|1|A|U|387
5LZE|1|A|G|388
5LZE|1|A|G|389
5LZE|1|A|U|390
5LZE|1|A|A|391
5LZE|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain w

CCA 3' end of E-site tRNASec (low occupancy)