HL_5LZF_011

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5LZF|1|A|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.169

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZF|1|A|A|382
5LZF|1|A|C|383
5LZF|1|A|A|384
5LZF|1|A|C|385
5LZF|1|A|G|386
5LZF|1|A|U|387
5LZF|1|A|G|388
5LZF|1|A|G|389
5LZF|1|A|U|390
5LZF|1|A|A|391
5LZF|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain v

Transfer RNA; tRNA