HL_5LZY_028

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

5LZY|1|5|U|1596, 5LZY|1|5|A|1600, 5LZY|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_028 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1145

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5LZY|1|5|A|1593
5LZY|1|5|C|1594
5LZY|1|5|G|1595
5LZY|1|5|U|1596
5LZY|1|5|G|1597
5LZY|1|5|C|1598
5LZY|1|5|G|1599
5LZY|1|5|A|1600
5LZY|1|5|A|1601
5LZY|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37