HL_5LZY_101

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

5LZY|1|9|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_101 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4844

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZY|1|9|U|885
5LZY|1|9|A|886
5LZY|1|9|U|887
5LZY|1|9|U|888
5LZY|1|9|U|889
5LZY|1|9|U|890
5LZY|1|9|G|891
5LZY|1|9|U|892
5LZY|1|9|U|893
5LZY|1|9|G|894
5LZY|1|9|G|895
5LZY|1|9|U|896
5LZY|1|9|U|897
5LZY|1|9|U|898
5LZY|1|9|U|899
5LZY|1|9|C|900
5LZY|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

uS17