HL_5M1J_020
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5M1J|1|14|U|879, 5M1J|1|14|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1415
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|14|A|876
5M1J|1|14|C|877
5M1J|1|14|G|878
5M1J|1|14|U|879
5M1J|1|14|G|880
5M1J|1|14|C|881
5M1J|1|14|A|882
5M1J|1|14|A|883
5M1J|1|14|A|884
5M1J|1|14|U|885
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain B5
- 60S ribosomal protein L3
- Chain C5
- 60S ribosomal protein L4-A
- Chain P5
- 60S ribosomal protein L17-A
- Chain j5
- 60S ribosomal protein L37-A
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