HL_5M1J_027

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5M1J|1|14|U|1241, 5M1J|1|14|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.2048

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5M1J|1|14|C|1239
5M1J|1|14|A|1240
5M1J|1|14|U|1241
5M1J|1|14|G|1242
5M1J|1|14|G|1243
5M1J|1|14|A|1244
5M1J|1|14|A|1245
5M1J|1|14|G|1246
5M1J|1|14|U|1247
5M1J|1|14|C|1248
5M1J|1|14|G|1249

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A1

Protein DOM34