HL_5M1J_041

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

5M1J|1|14|C|1846, 5M1J|1|14|G|1848, 5M1J|1|14|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_041 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.0924

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5M1J|1|14|C|1844
5M1J|1|14|G|1845
5M1J|1|14|C|1846
5M1J|1|14|A|1847
5M1J|1|14|G|1848
5M1J|1|14|C|1849
5M1J|1|14|A|1850
5M1J|1|14|G|1851

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain C5

60S ribosomal protein L4-A

Chain P5

60S ribosomal protein L17-A

Chain j5

60S ribosomal protein L37-A

Chain l5

60S ribosomal protein L39