HL_5M1J_049
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5M1J|1|14|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_049 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1389
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5M1J|1|14|G|2253
5M1J|1|14|U|2254
5M1J|1|14|A|2255
5M1J|1|14|A|2256
5M1J|1|14|C|2257
5M1J|1|14|U|2258
5M1J|1|14|A|2259
5M1J|1|14|U|2260
5M1J|1|14|G|2261
5M1J|1|14|A|2262
5M1J|1|14|C|2263
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 22
- Small subunit ribosomal RNA; SSU rRNA
- Chain A1
- Protein DOM34
- Chain A3
- Transfer RNA; tRNA
- Chain e2
- 40S ribosomal protein S30-A
Coloring options: