HL_5M1J_050

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5M1J|1|14|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1166

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5M1J|1|14|U|2292
5M1J|1|14|C|2293
5M1J|1|14|U|2294
5M1J|1|14|A|2295
5M1J|1|14|A|2296
5M1J|1|14|U|2297
5M1J|1|14|U|2298
5M1J|1|14|A|2299
5M1J|1|14|G|2300

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain A1

Protein DOM34

Chain V5

60S ribosomal protein L23-A