HL_5M1J_078

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5M1J|1|22|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_078 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1344

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5M1J|1|22|G|243
5M1J|1|22|A|244
5M1J|1|22|U|245
5M1J|1|22|G|246
5M1J|1|22|A|247
5M1J|1|22|U|248
5M1J|1|22|U|249
5M1J|1|22|C|250

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain G2

40S ribosomal protein S6-A

Chain L2

40S ribosomal protein S11-A