HL_5M1J_080

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5M1J|1|22|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_080 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1204

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5M1J|1|22|G|330
5M1J|1|22|A|331
5M1J|1|22|U|332
5M1J|1|22|A|333
5M1J|1|22|G|334
5M1J|1|22|U|335
5M1J|1|22|G|336
5M1J|1|22|G|337
5M1J|1|22|C|338

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S8-A

Chain L2

40S ribosomal protein S11-A