HL_5M1J_092

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_092 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1637

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5M1J|1|22|A|829
5M1J|1|22|U|830
5M1J|1|22|U|831
5M1J|1|22|U|832
5M1J|1|22|U|833
5M1J|1|22|G|834
5M1J|1|22|U|835
5M1J|1|22|U|836
5M1J|1|22|G|837
5M1J|1|22|G|838
5M1J|1|22|U|839
5M1J|1|22|U|840
5M1J|1|22|U|841
5M1J|1|22|C|842
5M1J|1|22|U|843

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain L2

40S ribosomal protein S11-A