HL_5M1J_100

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5M1J|1|22|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_100 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.182

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5M1J|1|22|A|1238
5M1J|1|22|U|1239
5M1J|1|22|U|1240
5M1J|1|22|G|1241
5M1J|1|22|A|1242
5M1J|1|22|G|1243
5M1J|1|22|A|1244
5M1J|1|22|G|1245
5M1J|1|22|C|1246
5M1J|1|22|U|1247

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain P2

40S ribosomal protein S15

Chain d2

40S ribosomal protein S29-A

Chain f2

Ubiquitin-40S ribosomal protein S31