HL_5M1J_102

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5M1J|1|22|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_102 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1824

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5M1J|1|22|C|1309
5M1J|1|22|U|1310
5M1J|1|22|U|1311
5M1J|1|22|A|1312
5M1J|1|22|A|1313
5M1J|1|22|U|1314
5M1J|1|22|U|1315
5M1J|1|22|G|1316

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain R2

40S ribosomal protein S17-B