HL_5M1J_103

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_103 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.5708

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5M1J|1|22|C|1359
5M1J|1|22|A|1360
5M1J|1|22|U|1361
5M1J|1|22|U|1362
5M1J|1|22|U|1363
5M1J|1|22|G|1364

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain F2

40S ribosomal protein S5

Chain Q2

40S ribosomal protein S16-A

Chain T2

40S ribosomal protein S19-A