HL_5M1J_116
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YYG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 5M1J|1|A3|A|38
- QA status
- Modified nucleotides: OMC, OMG, YYG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_116 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.3902
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5M1J|1|A3|A|29
5M1J|1|A3|G|30
5M1J|1|A3|A|31
5M1J|1|A3|OMC|32
5M1J|1|A3|U|33
5M1J|1|A3|OMG|34
5M1J|1|A3|A|35
5M1J|1|A3|A|36
5M1J|1|A3|YYG|37
5M1J|1|A3|A|38
5M1J|1|A3|PSU|39
5M1J|1|A3|5MC|40
5M1J|1|A3|U|41
Current chains
- Chain A3
- yeast Phe-tRNA-Phe
Nearby chains
- Chain 22
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q2
- 40S ribosomal protein S16-A
- Chain X7
- nonstop mRNA
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