HL_5M1J_123
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_123 not in the Motif Atlas
- Geometric match to HL_5TBW_230
- Geometric discrepancy: 0.1301
- The information below is about HL_5TBW_230
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|44|C|47
5M1J|1|44|A|48
5M1J|1|44|G|49
5M1J|1|44|C|50
5M1J|1|44|G|51
5M1J|1|44|A|52
5M1J|1|44|A|53
5M1J|1|44|A|54
5M1J|1|44|U|55
5M1J|1|44|G|56
Current chains
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain X5
- 60S ribosomal protein L25
- Chain h5
- 60S ribosomal protein L35-A
- Chain j5
- 60S ribosomal protein L37-A
- Chain l5
- 60S ribosomal protein L39
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