HL_5MC6_020

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

5MC6|1|2|U|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4009

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5MC6|1|2|A|829
5MC6|1|2|U|830
5MC6|1|2|U|831
5MC6|1|2|U|832
5MC6|1|2|U|833
5MC6|1|2|G|834
5MC6|1|2|U|835
5MC6|1|2|U|836
5MC6|1|2|G|837
5MC6|1|2|G|838
5MC6|1|2|U|839
5MC6|1|2|U|840
5MC6|1|2|U|841
5MC6|1|2|C|842
5MC6|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S11-A