HL_5MC6_028

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5MC6|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1894

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5MC6|1|2|A|1238
5MC6|1|2|U|1239
5MC6|1|2|U|1240
5MC6|1|2|G|1241
5MC6|1|2|A|1242
5MC6|1|2|G|1243
5MC6|1|2|A|1244
5MC6|1|2|G|1245
5MC6|1|2|C|1246
5MC6|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31