HL_5MC6_030

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5MC6|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_030 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1567

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5MC6|1|2|C|1309
5MC6|1|2|U|1310
5MC6|1|2|U|1311
5MC6|1|2|A|1312
5MC6|1|2|A|1313
5MC6|1|2|U|1314
5MC6|1|2|U|1315
5MC6|1|2|G|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S17-B