HL_5MC6_057
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|879, 5MC6|1|BQ|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_057 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.13
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5MC6|1|BQ|A|876
5MC6|1|BQ|C|877
5MC6|1|BQ|G|878
5MC6|1|BQ|U|879
5MC6|1|BQ|G|880
5MC6|1|BQ|C|881
5MC6|1|BQ|A|882
5MC6|1|BQ|A|883
5MC6|1|BQ|A|884
5MC6|1|BQ|U|885
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BA
- 60S ribosomal protein L3
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: