HL_5MC6_087

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5MC6|1|BQ|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MC6_087 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5MC6|1|BQ|U|2292
5MC6|1|BQ|C|2293
5MC6|1|BQ|U|2294
5MC6|1|BQ|A|2295
5MC6|1|BQ|A|2296
5MC6|1|BQ|U|2297
5MC6|1|BQ|U|2298
5MC6|1|BQ|A|2299
5MC6|1|BQ|G|2300

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

60S ribosomal protein L23-A