HL_5MC6_112
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5MC6|1|BS|U|81, 5MC6|1|BS|C|84, 5MC6|1|BS|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_112 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2974
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5MC6|1|BS|U|69
5MC6|1|BS|G|70
5MC6|1|BS|A|71
5MC6|1|BS|A|72
5MC6|1|BS|U|73
5MC6|1|BS|U|74
5MC6|1|BS|G|75
5MC6|1|BS|C|76
5MC6|1|BS|A|77
5MC6|1|BS|G|78
5MC6|1|BS|A|79
5MC6|1|BS|A|80
5MC6|1|BS|U|81
5MC6|1|BS|U|82
5MC6|1|BS|C|83
5MC6|1|BS|C|84
5MC6|1|BS|G|85
5MC6|1|BS|U|86
5MC6|1|BS|G|87
5MC6|1|BS|A|88
5MC6|1|BS|A|89
Current chains
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain BP
- 60S ribosomal protein L35-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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