3D structure

PDB id
5ME1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
5ME1|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5ME1_017 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0428
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5ME1|1|A|G|786
5ME1|1|A|A|787
5ME1|1|A|U|788
5ME1|1|A|U|789
5ME1|1|A|A|790
5ME1|1|A|G|791
5ME1|1|A|A|792
5ME1|1|A|U|793
5ME1|1|A|A|794
5ME1|1|A|C|795
5ME1|1|A|C|796

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain U
30S ribosomal protein S21
Chain X
Transfer RNA; tRNA
Chain Y
Translation initiation factor IF-3
Chain Z
Translation initiation factor IF-3

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1654 s