3D structure

PDB id
5MEI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Agelastatin A bound to the 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
5MEI|1|1|C|1846, 5MEI|1|1|G|1848, 5MEI|1|1|A|1850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MEI_041 not in the Motif Atlas
Homologous match to HL_5TBW_041
Geometric discrepancy: 0.0778
The information below is about HL_5TBW_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56817.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

5MEI|1|1|C|1844
5MEI|1|1|G|1845
5MEI|1|1|C|1846
5MEI|1|1|A|1847
5MEI|1|1|G|1848
5MEI|1|1|C|1849
5MEI|1|1|A|1850
5MEI|1|1|G|1851

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AK
60S ribosomal protein L37-A
Chain AM
60S ribosomal protein L39
Chain l
60S ribosomal protein L4-A
Chain x
60S ribosomal protein L17-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 3.0518 s