HL_5MEI_111

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

5MEI|1|6|U|1704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_111 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.2046

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MEI|1|6|A|1691
5MEI|1|6|G|1692
5MEI|1|6|A|1693
5MEI|1|6|A|1694
5MEI|1|6|G|1695
5MEI|1|6|G|1696
5MEI|1|6|G|1697
5MEI|1|6|G|1698
5MEI|1|6|G|1699
5MEI|1|6|C|1700
5MEI|1|6|A|1701
5MEI|1|6|A|1702
5MEI|1|6|C|1703
5MEI|1|6|U|1704
5MEI|1|6|C|1705
5MEI|1|6|C|1706
5MEI|1|6|A|1707
5MEI|1|6|U|1708
5MEI|1|6|C|1709
5MEI|1|6|U|1710

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A