3D structure

PDB id
5MEI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Agelastatin A bound to the 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GAUAGUGGC
Length
9 nucleotides
Bulged bases
5MEI|1|A|G|337
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MEI_120 not in the Motif Atlas
Geometric match to HL_4V88_193
Geometric discrepancy: 0.096
The information below is about HL_4V88_193
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_82182.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

5MEI|1|A|G|330
5MEI|1|A|A|331
5MEI|1|A|U|332
5MEI|1|A|A|333
5MEI|1|A|G|334
5MEI|1|A|U|335
5MEI|1|A|G|336
5MEI|1|A|G|337
5MEI|1|A|C|338

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain J
40S ribosomal protein S8-A
Chain M
40S ribosomal protein S11-A

Coloring options:


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