HL_5MEI_139
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 5MEI|1|A|G|1243, 5MEI|1|A|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_139 not in the Motif Atlas
- Geometric match to HL_4V88_213
- Geometric discrepancy: 0.1473
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5MEI|1|A|A|1238
5MEI|1|A|U|1239
5MEI|1|A|U|1240
5MEI|1|A|G|1241
5MEI|1|A|A|1242
5MEI|1|A|G|1243
5MEI|1|A|A|1244
5MEI|1|A|G|1245
5MEI|1|A|C|1246
5MEI|1|A|U|1247
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 40S ribosomal protein S15
- Chain e
- 40S ribosomal protein S29-A
- Chain g
- Ubiquitin-40S ribosomal protein S31
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