HL_5MEI_169

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5MEI|1|AR|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_169 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1049

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MEI|1|AR|G|910
5MEI|1|AR|C|911
5MEI|1|AR|G|912
5MEI|1|AR|A|913
5MEI|1|AR|A|914
5MEI|1|AR|A|915
5MEI|1|AR|G|916
5MEI|1|AR|A|917
5MEI|1|AR|C|918

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CP

60S ribosomal protein L15-A

Chain DL

60S ribosomal protein L37-A