HL_5MEI_176

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_176 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2531

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5MEI|1|AR|U|1267
5MEI|1|AR|G|1268
5MEI|1|AR|U|1269
5MEI|1|AR|A|1270
5MEI|1|AR|A|1271
5MEI|1|AR|C|1272
5MEI|1|AR|A|1273
5MEI|1|AR|A|1274

Current chains

Chain AR

25S ribosomal RNA

Nearby chains