HL_5MEI_201

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5MEI|1|AR|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_201 not in the Motif Atlas

Homologous match to HL_8P9A_163

Geometric discrepancy: 0.2666

The information below is about HL_8P9A_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23509.1

Basepair signature

cSH-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5MEI|1|AR|G|2534
5MEI|1|AR|A|2535
5MEI|1|AR|A|2536
5MEI|1|AR|U|2537
5MEI|1|AR|U|2538
5MEI|1|AR|C|2539
5MEI|1|AR|A|2540
5MEI|1|AR|U|2541
5MEI|1|AR|U|2542
5MEI|1|AR|U|2543
5MEI|1|AR|U|2544
5MEI|1|AR|C|2545

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CJ

60S ribosomal protein L8-A

Chain s1

40S ribosomal protein S1-A