HL_5MEI_230
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5MEI|1|4|C|84, 5MEI|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_230 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.1278
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5MEI|1|4|U|69
5MEI|1|4|G|70
5MEI|1|4|A|71
5MEI|1|4|A|72
5MEI|1|4|U|73
5MEI|1|4|U|74
5MEI|1|4|G|75
5MEI|1|4|C|76
5MEI|1|4|A|77
5MEI|1|4|G|78
5MEI|1|4|A|79
5MEI|1|4|A|80
5MEI|1|4|U|81
5MEI|1|4|U|82
5MEI|1|4|C|83
5MEI|1|4|C|84
5MEI|1|4|G|85
5MEI|1|4|U|86
5MEI|1|4|G|87
5MEI|1|4|A|88
5MEI|1|4|A|89
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AI
- 60S ribosomal protein L35-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AM
- 60S ribosomal protein L39
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain DJ
- 60S ribosomal protein L35-A
Coloring options: