HL_5MMI_043

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

5MMI|1|A|A|1670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_043 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1028

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MMI|1|A|A|1666
5MMI|1|A|G|1667
5MMI|1|A|A|1668
5MMI|1|A|G|1669
5MMI|1|A|A|1670
5MMI|1|A|A|1671
5MMI|1|A|U|1672

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5