HL_5NDK_054
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 5NDK|1|14|U|796, 5NDK|1|14|A|800, 5NDK|1|14|A|801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_054 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.0471
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|14|G|793
5NDK|1|14|G|794
5NDK|1|14|A|795
5NDK|1|14|U|796
5NDK|1|14|G|797
5NDK|1|14|C|798
5NDK|1|14|A|799
5NDK|1|14|A|800
5NDK|1|14|A|801
5NDK|1|14|C|802
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L3
- Chain A5
- 50S ribosomal protein L22
- Chain J5
- 50S ribosomal protein L32
- Chain L5
- 50S ribosomal protein L34
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